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rated 0 times [  42] [ 0]  / answers: 1 / hits: 100515  / 2 Years ago, tue, june 21, 2022, 6:36:34

I need to compile HDF5 ,and after configure process ,i receive this error:



configure: error: C++ preprocessor "/lib/cpp" fails sanity check


And I know i have cpp installed on my ubuntu



Any help would be really appreciated :)
This is the output of dpkg --list | grep compiler



ii  gcc                                                        4:4.8.2-1ubuntu6                                    amd64        GNU C compiler
ii gcc-4.8 4.8.2-19ubuntu1 amd64 GNU C compiler
ii gfortran 4:4.8.2-1ubuntu6 amd64 GNU Fortran 95 compiler
ii gfortran-4.8 4.8.2-19ubuntu1 amd64 GNU Fortran compiler
ii hardening-includes 2.5ubuntu2 all Makefile for enabling compiler flags for security hardening
ii libllvm3.4:amd64 1:3.4-1ubuntu3 amd64 Modular compiler and toolchain technologies, runtime library
ii libxkbcommon0:amd64 0.4.1-0ubuntu1 amd64 library interface to the XKB compiler


And this is th error i recieve:



  nazanin@barashka:~/hdf5-1.8.13$ ./configure --with-zlib=/home/nazanin/local    --prefix=/home/nazanin/local
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking shell variables initial values... done
checking if basename works... yes
checking if xargs works... yes
checking for cached host... none
checking for config x86_64-unknown-linux-gnu... no
checking for config x86_64-unknown-linux-gnu... no
checking for config unknown-linux-gnu... no
checking for config unknown-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-unknown... no
checking for config linux-gnu... found
compiler 'gcc' is GNU gcc-4.8.2
checking for config ./config/site-specific/host-barashka... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking if unsupported combinations of configure options are allowed... no
checking if Fortran interface enabled... no
checking if Fortran 2003 interface enabled... yes
checking whether we are using the GNU C++ compiler... no
checking whether g++ accepts -g... no
checking dependency style of g++... none
checking how to run the C++ preprocessor... /lib/cpp
configure: error: in `/home/nazanin/hdf5-1.8.13':
configure: error: C++ preprocessor "/lib/cpp" fails sanity check
See `config.log' for more details


Do i have to copy the config.log here?Thank you


More From » 14.04

 Answers
1

If your configure output looks similar tho this, the C++ compiler is missing:



[ ... ]
*** C++ compiler and preprocessor
checking for g++... no
checking for c++... no
checking for gpp... no
checking for aCC... no
checking for CC... no
checking for cxx... no
checking for cc++... no
checking for cl.exe... no
checking for FCC... no
checking for KCC... no
checking for RCC... no
checking for xlC_r... no
checking for xlC... no
checking whether we are using the GNU C++ compiler... no
checking whether g++ accepts -g... no
checking dependency style of g++... none
checking how to run the C++ preprocessor... /lib/cpp
configure: error: in `/home/ubuntu/.local/share/Trash/files/openmpi-1.4.1':
configure: error: C++ preprocessor "/lib/cpp" fails sanity check
See `config.log' for more details.




To install the GNU C++ compiler, use

apt-get install g++





The configure output shows that ./configure tried to find a C++ compiler by checking for a lot of known compiler names, one by one.

At the start, we see that g++ is missing - the preferred one, checked first.

But it goes on trying to find some other compiler that you may prefer to use.


[#23710] Tuesday, June 21, 2022, 2 Years  [reply] [flag answer]
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