Turns out my coworker had the same issue. With his permission here's the solution that worked right away:

First run this and scroll to the information about the keyboard
Run cat /proc/bus/input/devices | less

I: Bus=0005 Vendor=004c Product=026c Version=0160

N: Name="Magic Keyboard with Numeric Keypad"

P: Phys=44:e5:17:96:76:24

S: Sysfs=/devices/pci0000:00/0000:00:14.0/usb3/3-10/3-10:1.0/bluetooth/hci0/hci0:256/0005:004C:026C.0007/input/input38

U: Uniq=c4:14:11:03:c2:de

H: Handlers=sysrq kbd event20 leds 

B: PROP=0

B: EV=120013

B: KEY=10000 0 0 1 1007b00001007 ff9f207ac14057ff ffbeffdfffefffff fffffffffffffffe

B: MSC=10

B: LED=1f

Now construct an id via this way:

evdev:input:b<bus_id>v<vendor_id>p<product_id>e<version_id>-<modalias>

Where version and modalies don't matter. I get this:

evdev:input:b0005v004Cp026C*

Next create this file

etc/udev/hwdb.d/60-applekeyboard.hwdb

I don't think the name matters but I am not sure.

The file should contain the ID we just made and the remap of keys:

# Apple magic

evdev:input:b0005v004Cp026C*

 KEYBOARD_KEY_700e2=leftmeta

 KEYBOARD_KEY_700e3=leftalt

How do you find the names? just execute sudo evtest find your keyboard and press the key you want to chage.. Output looks like this:

Event: time 1644400418.762658, type 4 (EV_MSC), code 4 (MSC_SCAN), value 700e3

Event: time 1644400418.762658, type 1 (EV_KEY), code 56 (KEY_LEFTMETA), value 1

Use that output to construct the desired key and change.

Next, sudo run these commands to update:

systemd-hwdb update

udevadm control --reload-rules

udevadm trigger

Then you are done.