Question

1

Ubuntu sometimes starts swapping like crazy for no reason

rated 0 times [ 1] [ 0] / answers: 1 / hits: 3026 / 1 Year ago, tue, december 20, 2022, 4:25:23

Every once in a while, my Ubuntu starts using the hard disk like crazy, and for 3 minutes I can't move the mouse nor access any console, even CTRL-ALT-BACKSPACE and CTRL-ALT-F1 do nothing.

It is usually when doing some action (opening a new browser tab, starting Eclipse, etc).

I think that at those times my Ubuntu starts swapping like crazy, for no reason.

It happens more if I have OpenOffice+Eclipse+Firefox open, but sometimes it also happens with only very simple apps open.

I used iotop to record disk activity during one of those freeze. That time I only had Chrome, gnome-terminal, gedit open. I had started iotop with sudo nice -20 sudo iotop -tbod10 > ~/iotop.log. It is supposed to write to the log every 10 seconds, but during the freeze it did not manage to write anything. However, the log just before the freeze (09:42:23) indicates kswapd is probably the culprit at 12.26 M/s:

    TIME  TID  PRIO  USER     DISK READ  DISK WRITE  SWAPIN      IO    COMMAND

09:42:23    27 be/4 root        0.00 B/s   12.26 M/s  0.00 % 99.99 % [kswapd0]

09:42:23  1828 be/4 nico     1081.85 K/s    0.00 B/s  1.78 % 61.16 % compiz

09:42:23 31484 be/4 nico      128.22 K/s  668.16 B/s  0.00 % 50.59 % python /usr/bin/indicator-weather

09:42:23 17339 be/4 nico       89.72 K/s  668.16 B/s  0.00 % 50.32 % google-chrome

09:42:23 17397 be/4 nico      806.49 K/s    0.00 B/s  2.13 % 43.42 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc3880c0700.1895579466

09:42:23   315 be/4 root      334.08 B/s    0.00 B/s  0.00 % 37.90 % [flush-8:0]

09:42:23   297 be/3 root        0.00 B/s 1670.40 B/s  0.00 % 32.57 % [jbd2/sda1-8]

09:42:23  1244 be/4 root      502.75 K/s    0.00 B/s  0.77 % 31.90 % X :0 -nr -verbose -auth /var/run/gdm/auth-for-gdm-XEqu73/database -nolisten tcp vt7

09:42:23 17403 be/5 nico      482.52 K/s    0.00 B/s  0.00 % 30.08 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc386e35000.1143953050

09:42:23 17608 be/4 root        0.00 B/s    0.00 B/s  0.00 % 27.27 % [kworker/0:2]

09:42:23  1857 be/4 nico      430.65 K/s    0.00 B/s  0.00 % 25.40 % indicator-multiload

09:42:23  2178 be/4 nico      100.49 K/s    0.00 B/s  0.00 % 23.91 % dropbox

09:42:23 17340 be/4 nico      448.59 K/s    0.00 B/s  3.66 % 18.24 % google-chrome

09:42:23 17322 be/4 nico      408.79 K/s    0.00 B/s  0.25 % 16.66 % google-chrome

09:42:23 17408 be/5 nico      162.47 K/s    0.00 B/s  0.37 % 15.75 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc387166c40.2054812173

09:42:23  1836 be/4 nico      278.62 K/s    0.00 B/s 72.10 % 14.14 % nautilus

09:42:23  9266 be/4 root       78.63 K/s    0.00 B/s  0.00 % 12.74 % adb fork-server server

09:42:23 17417 be/5 nico        0.00 B/s    0.00 B/s  0.00 % 11.63 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc386e35000.1143953050

09:42:23 17414 be/5 nico        9.79 K/s    0.00 B/s  0.00 % 11.63 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc387166c40.2054812173

09:42:23 17416 be/4 nico      668.16 B/s    0.00 B/s  0.00 % 11.63 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc3880c0700.1895579466

09:42:23 17237 be/4 postfix     5.55 K/s    0.00 B/s 20.29 %  9.59 % pickup -l -t fifo -u -c

09:42:23 17500 be/4 nico       27.73 K/s    0.00 B/s  0.00 %  9.39 % npwrapper.libflashplayer.so --lang=en-US --channel=17322.0x7fc38990c2c0.322771554

09:42:23 17399 be/4 nico       17.29 K/s    0.00 B/s  0.00 %  8.67 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc3880c0700.1895579466

09:42:23   584 be/4 root       87.44 K/s    0.00 B/s  0.00 %  6.36 % NetworkManager

09:42:23 17533 be/4 nico       47.96 K/s    0.00 B/s  0.00 %  5.88 % GoogleTalkPlugin

09:42:23  2218 be/4 nico      173.24 K/s    0.00 B/s  0.00 %  5.78 % unity-panel-service

09:42:23  1462 be/4 mysql      38.82 K/s    0.00 B/s  0.00 %  5.76 % mysqld

09:42:23  1463 be/4 mysql       5.87 K/s    0.00 B/s  0.00 %  5.65 % mysqld

09:42:23 29621 be/4 nico       32.95 K/s    0.00 B/s  0.00 %  4.43 % python /usr/bin/indicator-weather

09:42:23  1382 be/4 root       39.48 K/s    0.00 B/s  0.00 %  4.15 % apache2 -k start

09:42:23 17513 be/4 nico      119.41 K/s    0.00 B/s  0.00 %  4.06 % npviewer.bin --plugin /usr/lib/flashplugin-installer/libflashplayer.so --connection /org/wrapper/NSPlugins/libflashplayer.so/17500-2

09:42:23 17335 be/4 nico       21.86 K/s 1670.40 B/s  0.00 %  4.02 % google-chrome

09:42:23  2201 be/4 nico       10.11 K/s    0.00 B/s  0.00 %  3.85 % bamfdaemon

09:42:23  1842 be/4 nico       30.34 K/s    0.00 B/s  0.00 %  3.23 % gnome-power-manager

09:42:23  1812 be/4 nico       26.10 K/s    0.00 B/s  0.00 %  2.89 % gnome-settings-daemon

09:42:23  1848 be/4 nico       38.17 K/s    0.00 B/s  0.00 %  2.55 % indicator-sensors

09:42:23 12233 be/4 root       31.32 K/s 1002.24 B/s  2.06 %  2.54 % python /usr/bin/iotop -tbod10

09:42:23  1915 be/4 nico       10.11 K/s    0.00 B/s  0.00 %  2.27 % gvfs-afc-volume-monitor

09:42:23  1831 be/4 nico       10.44 K/s    0.00 B/s  0.00 %  2.13 % compiz

09:42:23  1464 be/4 mysql      20.88 K/s    0.00 B/s  0.00 %  1.84 % mysqld

09:42:23  2309 be/4 nico       18.92 K/s    0.00 B/s  0.00 %  1.79 % unity-applications-daemon

09:42:23 17337 be/4 nico        9.14 K/s    0.00 B/s  0.00 %  1.74 % google-chrome

09:42:23 17343 be/4 nico       13.38 K/s    0.00 B/s  0.00 %  1.72 % google-chrome

09:42:23  1252 be/4 root       51.55 K/s    0.00 B/s  0.00 %  1.65 % master

09:42:23  1907 be/4 root       18.27 K/s    0.00 B/s  0.00 %  1.21 % udisks-daemon: polling /dev/sr0

09:42:23  2186 be/4 nico       46.00 K/s    0.00 B/s  0.00 %  1.13 % python /usr/share/system-config-printer/applet.py

09:42:23  1862 be/4 nico        5.22 K/s    0.00 B/s  0.00 %  0.98 % indicator-multiload

09:42:23  2199 be/4 nico       26.10 K/s    0.00 B/s  0.00 %  0.90 % unity-window-decorator

09:42:23   906 be/4 root        2.28 K/s    0.00 B/s  0.00 %  0.82 % irqbalance

09:42:23   580 be/4 avahi      32.63 K/s    0.00 B/s  0.00 %  0.59 % avahi-daemon: running [nico.local]

09:42:23  1877 be/4 nico       18.60 K/s    0.00 B/s  0.00 %  0.57 % notify-osd

09:42:23 17360 be/4 nico       43.72 K/s    0.00 B/s 26.23 %  0.51 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc38672e8c0.1339188300

09:42:23  1800 be/4 nico       27.73 K/s    0.00 B/s  0.00 %  0.34 % dbus-daemon --fork --print-pid 5 --print-address 7 --session

09:42:23   627 be/4 root       10.44 K/s    0.00 B/s  0.00 %  0.33 % wpa_supplicant -u -s

09:42:23  2243 be/4 nico        3.59 K/s    0.00 B/s  0.00 %  0.33 % indicator-application-service

09:42:23  2284 be/4 nico        6.20 K/s    0.00 B/s  0.00 %  0.19 % update-notifier

09:42:23  2234 be/4 nico        0.00 B/s    0.00 B/s  0.00 %  0.18 % indicator-application-service

09:42:23  2220 be/4 nico        4.24 K/s    0.00 B/s  0.00 %  0.10 % unity-panel-service

09:42:23 17362 be/4 nico        7.83 K/s    0.00 B/s  2.54 %  0.00 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc38672e540.2001766922

09:42:23 17412 be/5 nico        0.00 B/s    0.00 B/s  9.26 %  0.00 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc3880afa80.2009126862



    TIME  TID  PRIO  USER     DISK READ  DISK WRITE  SWAPIN      IO    COMMAND

09:45:22 17596 be/4 root        0.00 B/s    0.00 B/s  0.00 % 99.99 % [kworker/1:0]

09:45:22 17608 be/4 root        0.00 B/s    0.00 B/s  0.00 % 98.44 % [kworker/0:2]

09:45:22   315 be/4 root      808.56 B/s   17.81 K/s  0.00 % 86.79 % [flush-8:0]

09:45:22  1828 be/4 nico      621.79 K/s    0.00 B/s 16.33 % 86.29 % compiz

09:45:22 17340 be/4 nico      815.78 K/s    0.00 B/s 14.61 % 83.30 % google-chrome

09:45:22  1857 be/4 nico      575.28 K/s    0.00 B/s 12.32 % 82.64 % indicator-multiload

09:45:22  1812 be/4 nico      540.14 K/s    0.00 B/s  3.06 % 81.94 % gnome-settings-daemon

09:45:22  1848 be/4 nico      541.02 K/s    0.00 B/s 12.30 % 81.58 % indicator-sensors

09:45:22   584 be/4 root      606.07 K/s    0.00 B/s 11.51 % 78.40 % NetworkManager

09:45:22   906 be/4 root      308.53 K/s    0.00 B/s  0.00 % 76.26 % irqbalance

09:45:22 17335 be/4 nico       18.79 K/s  332.94 B/s  8.56 % 60.25 % google-chrome

09:45:22  1382 be/4 root      361.76 K/s    0.00 B/s  0.00 % 49.17 % apache2 -k start

09:45:22 17533 be/4 nico      282.38 K/s    0.00 B/s  0.00 % 45.30 % GoogleTalkPlugin

09:45:22 17550 be/4 nico      134.88 K/s    0.00 B/s  0.00 % 40.96 % npviewer.bin --plugin /usr/lib/flashplugin-installer/libflashplayer.so --connection /org/wrapper/NSPlugins/libflashplayer.so/17500-2

09:45:22  2309 be/4 nico      260.08 K/s    0.00 B/s  0.00 % 38.69 % unity-applications-daemon

09:45:22  1463 be/4 mysql     171.28 K/s    0.00 B/s  0.00 % 38.61 % mysqld

09:45:22 17360 be/4 nico      377.27 K/s    0.00 B/s  2.14 % 37.14 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc38672e8c0.1339188300

09:45:22  1888 be/4 nico      177.20 K/s    0.00 B/s  8.69 % 35.51 % python /usr/lib/desktopcouch/desktopcouch-service

09:45:22  2172 be/4 nico       64.52 K/s    0.00 B/s  3.93 % 35.19 % dropbox

09:45:22 17536 be/4 nico       71.95 K/s    0.00 B/s  0.00 % 32.79 % npviewer.bin --plugin /usr/lib/flashplugin-installer/libflashplayer.so --connection /org/wrapper/NSPlugins/libflashplayer.so/17500-2

09:45:22  9266 be/4 root      106.53 K/s    0.00 B/s  0.00 % 28.34 % adb fork-server server

09:45:22 17351 be/4 nico      225.76 K/s    0.00 B/s  1.69 % 27.98 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc3866eae00.1806036416

09:45:22 17412 be/5 nico      165.21 K/s    0.00 B/s  0.00 % 24.66 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc3880afa80.2009126862

09:45:22  2179 be/4 nico       58.25 K/s    0.00 B/s 24.18 % 22.89 % dropbox

09:45:22  2178 be/4 nico       29.63 K/s    0.00 B/s  0.00 % 22.83 % dropbox

09:45:22  2284 be/4 nico      139.46 K/s    0.00 B/s  3.82 % 21.98 % update-notifier

09:45:22   627 be/4 root       89.74 K/s    0.00 B/s 74.21 % 21.71 % wpa_supplicant -u -s

09:45:22  2218 be/4 nico      129.89 K/s    0.00 B/s 76.33 % 21.59 % unity-panel-service

09:45:22 17532 be/4 nico       94.64 K/s    0.00 B/s  0.00 % 21.24 % GoogleTalkPlugin

09:45:22  9652 be/4 nico       12.91 K/s    0.00 B/s  0.00 % 20.14 % ruby script/rails console

09:45:22 17408 be/5 nico      152.30 K/s    0.00 B/s 83.52 % 17.19 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc387166c40.2054812173

09:45:22 17362 be/4 nico      178.41 K/s    0.00 B/s  1.63 % 16.11 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc38672e540.2001766922

09:45:22  1907 be/4 root       93.99 K/s    0.00 B/s  0.00 % 15.71 % udisks-daemon: polling /dev/sr0

09:45:22    27 be/4 root        0.00 B/s  136.18 M/s  0.00 % 15.66 % [kswapd0]

09:45:22  1915 be/4 nico       30.82 K/s    0.00 B/s  0.00 % 13.92 % gvfs-afc-volume-monitor

09:45:22 17403 be/5 nico      107.90 K/s    0.00 B/s 89.46 % 12.11 % --disable-client-side-phishing-detection --enable-print-preview --disable-webgl --disable-gl-multisampling --disable-accelerated-compositing --channel=17322.0x7fc386e35000.1143953050

09:45:22  1839 be/4 nico       60.13 K/s    0.00 B/s 21.61 %  9.98 % nm-applet --sm-disable

09:45:22  1244 be/4 root      105.58 K/s    0.00 B/s 84.86 %  9.73 % X :0 -nr -verbose -auth /var/run/gdm/auth-for-gdm-XEqu73/database -nolisten tcp vt7

09:45:22  1462 be/4 mysql      29.35 K/s    0.00 B/s  9.90 %  8.99 % mysqld

09:45:22  1464 be/4 mysql      26.41 K/s    0.00 B/s  0.00 %  8.55 % mysqld

I am using Ubuntu 2011.04 with encrypted home and 4GB physical memory + 4GB swap:

free -m

             total       used       free     shared    buffers     cached

Mem:          3894       3044        850          0         94        935

-/+ buffers/cache:       2013       1880

Swap:         4023        942       3081

I have much more RAM that I actually need, so this swapping craziness is baffling.

How can I stop those freezes?

UPDATE: As asked, here is the output of hdparm -Idc /dev/sda1:

/dev/sda1:

 IO_support    =  1 (32-bit)

 HDIO_GET_DMA failed: Inappropriate ioctl for device



ATA device, with non-removable media

    Model Number:       FUJITSU MJA2500BH G2                    

    Serial Number:      K95FT9A26PNT

    Firmware Revision:  0084001C

    Transport:          Serial, ATA8-AST, SATA 1.0a, SATA II Extensions, SATA Rev 2.5, SATA Rev 2.6

Standards:

    Used: ATA-8-ACS revision 3f 

    Supported: 8 7 6 5 

Configuration:

    Logical     max current

    cylinders   16383   16383

    heads       16  16

    sectors/track   63  63

        --

    CHS current addressable sectors:   16514064

    LBA    user addressable sectors:  268435455

    LBA48  user addressable sectors:  976773168

    Logical  Sector size:                   512 bytes

    Physical Sector size:                   512 bytes

    device size with M = 1024*1024:      476940 MBytes

    device size with M = 1000*1000:      500107 MBytes (500 GB)

    cache/buffer size  = 8192 KBytes (type=DualPortCache)

    Form Factor: 2.5 inch

    Nominal Media Rotation Rate: 5400

Capabilities:

    LBA, IORDY(can be disabled)

    Queue depth: 32

    Standby timer values: spec'd by Standard, no device specific minimum

    R/W multiple sector transfer: Max = 16  Current = 16

    Advanced power management level: disabled

    Recommended acoustic management value: 254, current value: 254

    DMA: mdma0 mdma1 mdma2 udma0 udma1 udma2 udma3 udma4 *udma5 

         Cycle time: min=120ns recommended=120ns

    PIO: pio0 pio1 pio2 pio3 pio4 

         Cycle time: no flow control=120ns  IORDY flow control=120ns

Commands/features:

    Enabled Supported:

       *    SMART feature set

            Security Mode feature set

       *    Power Management feature set

       *    Write cache

       *    Look-ahead

       *    Host Protected Area feature set

       *    WRITE_BUFFER command

       *    READ_BUFFER command

       *    DOWNLOAD_MICROCODE

            Advanced Power Management feature set

            SET_MAX security extension

       *    Automatic Acoustic Management feature set

       *    48-bit Address feature set

       *    Device Configuration Overlay feature set

       *    Mandatory FLUSH_CACHE

       *    FLUSH_CACHE_EXT

       *    SMART error logging

       *    SMART self-test

       *    General Purpose Logging feature set

       *    WRITE_{DMA|MULTIPLE}_FUA_EXT

       *    64-bit World wide name

       *    IDLE_IMMEDIATE with UNLOAD

       *    Disable Data Transfer After Error Detection

       *    WRITE_UNCORRECTABLE_EXT command

       *    {READ,WRITE}_DMA_EXT_GPL commands

       *    Segmented DOWNLOAD_MICROCODE

       *    Gen1 signaling speed (1.5Gb/s)

       *    Gen2 signaling speed (3.0Gb/s)

       *    Native Command Queueing (NCQ)

       *    Host-initiated interface power management

       *    Phy event counters

       *    NCQ priority information

       *    DMA Setup Auto-Activate optimization

            Device-initiated interface power management

       *    Software settings preservation

       *    SMART Command Transport (SCT) feature set

       *    SCT LBA Segment Access (AC2)

       *    SCT Error Recovery Control (AC3)

       *    SCT Features Control (AC4)

       *    SCT Data Tables (AC5)

Result of sdparm /dev/sda:

    /dev/sda: ATA       FUJITSU MJA2500B  0084

Read write error recovery mode page:

  AWRE        1

  ARRE        0

  PER         0

Caching (SBC) mode page:

  WCE         1

  RCD         0

Control mode page:

  SWP         0

Result of smartctl -l selftest /dev/sda:

SMART Self-test log structure revision number 1

Num  Test_Description    Status                  Remaining  LifeTime(hours)  LBA_of_first_error

# 1  Vendor offline      Completed without error       00%         0         -